FDRsupp-class {gQTLstats} | R Documentation |
"FDRsupp"
Support for FDR computations with ciseStore instances
Objects can be created by calls of the form new("FDRsupp", ...)
.
tab
:Object of class "data.frame"
a table
with association scores and plug-in FDR estimates evaluated on
selected score values
FDRfunc
:Object of class "function"
a
function of one argument with input association score and output
the corresponding FDR estimate
FDRmodel
:Object of class "gam"
that was fit to elements of tab
filterUsed
:Object of class "function"
a copy of the function used for filtering the store to
create the FDRfunc element.
sessinfo
:sessionInfo() value at time of construction
theCall
:instance of class "call"
showing call leading to construction
signature(x = "FDRsupp")
: extract
the FDR approximating function, a function of one (vector) argument
assumed to represent association scores, evaluating to the
plug-in FDR estimates corresponding to these scores
signature(x = "FDRsupp")
: extract the
table of association scores and empirical FDR estimates
Typically the FDRfunc
function is constructed using
a smooth model relating the estimated FDR to association scores.
showClass("FDRsupp")