plotPseudotimeTraj {flowSpy} | R Documentation |
plotPseudotimeTraj
plotPseudotimeTraj( object, cutoff = -1, markers = NULL, size = 0.5, alpha = 0.6, print.curve = TRUE, var.cols = FALSE, plot.theme = theme_bw() )
object |
An FSPY object |
cutoff |
numeric. Cutoff of trajectory value |
markers |
character. Markers used in the calculation progress |
size |
numeric. Size of the dot |
alpha |
numeric. Transparency (0-1) of the dot, default is 1. |
print.curve |
logical. Whether to perform curve fitting |
var.cols |
logical. Whether to plot stage |
plot.theme |
themes from |
ggplot2 figure
if (FALSE) { plotPseudotimeTraj(fspy) plotPseudotimeTraj(fspy, print.curve = F) plotPseudotimeTraj(fspy, var.cols = T) plotPseudotimeTraj(fspy) + scale_colour_gradientn(colors = c("#F4D31D", "#FF3222","#7A06A0")) plotPseudotimeTraj(fspy, markers = c("CD43", "CD34")) + scale_colour_gradientn(colors = c("#F4D31D", "#FF3222","#7A06A0")) }