runUMAP {flowSpy} | R Documentation |
Calculate Uniform Manifold Approximation and Projection in FSPY
runUMAP( object, umap.config = umap.defaults, n_neighbors = 30, dims = 2, verbose = FALSE, ... )
object |
an FSPY object |
umap.config |
object of class umap.config. See |
n_neighbors |
numeric. Number of neighbors |
dims |
numeric. Dim of umap, you can also change it in umap.config. |
verbose |
logical. Whether to print calculation progress. |
... |
Options to pass on to the |
An FSPY object
if (FALSE) { fspy <- runUMAP(fspy, verbose = TRUE) fspy <- runUMAP(fspy, n_neighbors = 20, verbose = TRUE) }