plotTrajHeatmap {flowSpy} | R Documentation |
Visualization heatmap of intermediate cells of FSPY
plotTrajHeatmap( object, cutoff = 0, markers = NULL, color = colorRampPalette(c("blue", "white", "red"))(100), scale = "row", ... )
object |
An FSPY object |
cutoff |
numeric. value to identify intermediate state cells |
markers |
markers to plot on the heatmap |
color |
vector. Colors used in heatmap. |
scale |
character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none" |
... |
options to pass on to the |
ggplot2 figure
if (FALSE) { plotTrajHeatmap(fspy) plotBranchHeatmap(fspy, color = colorRampPalette(c("purple","white","yellow"))(100)) plotBranchHeatmap(fspy, cluster_row = FALSE) plotBranchHeatmap(fspy, cluster_row = FALSE, cluster_col = FALSE) }