plotTree {flowSpy} | R Documentation |
plot MST of FSPY
plotTree( object, cex.size = 1, color.by = "cell.number", size.by = "cell.number", as.tree = FALSE, root.id = NULL, show.node.name = FALSE )
object |
an FSPY object |
cex.size |
numeric. size cex of the dot |
color.by |
numeric. size color theme of the dot |
size.by |
numeric. size theme of the dot |
as.tree |
logical. Whether to show node as tree |
root.id |
numeric. Root id of the tree, if as.tree is TRUE |
show.node.name |
logical. whether to show node name |
ggplot2 figure
if (FALSE) { plotTree(fspy) plotTree(fspy, show.node.name = T) plotTree(fspy, color.by = "CD43", show.node.name = T, cex.size = 1) + scale_colour_gradientn(colors = c("#00599F", "#EEEEEE", "#FF3222")) plotTree(fspy, color.by = "D0.percent", show.node.name = T, cex.size = 1) + scale_colour_gradientn(colors = c("#00599F", "#EEEEEE", "#FF3222")) plotTree(fspy, color.by = "D2.percent", show.node.name = T, cex.size = 1) + scale_colour_gradientn(colors = c("#00599F", "#EEEEEE", "#FF3222")) plotTree(fspy, color.by = "pseudotime", cex.size = 1) + scale_colour_gradientn(colors = c("#F4D31D", "#FF3222","#7A06A0")) }