runDiff {flowSpy} | R Documentation |
Calculating differentially expressed markers
runDiff(object, branch.id = NULL, branch.id.2 = NULL, verbose = FALSE)
object |
an FSPY object |
branch.id |
vector. Branch ids use to run differentially expressed markers |
branch.id.2 |
vector. Branch ids use to run differentially expressed markers in compare with branch.id |
verbose |
logic. Whether to print calculation progress. |
An FSPY object with cluster.id in meta.data
a data.frame with differential expressed markers
bulidTree
if (FALSE) { DEG.table <- runDiff(fspy) }