INI_Calls-class {farms} | R Documentation |
This is a class representation for an INI_calls-class
object. The INI_calls-class
consists of two instances of exprSet-class
, containing an informative exprSet
and a non-informative exprSet
.
Objects can be created using the function INIcalls
.
I_Calls
:Object of class "vector"
containing informative probe set names.
NI_Calls
:Object of class "vector"
containing non-informative probe set names.
I_Exprs
:Object of class exprSet-class
representing the informative exprSet
.
NI_Exprs
:Object of class exprSet-class
representing the non-informative exprSet
.
varZX
:Object of class "vector"
containing the INI-call value.
Djork Clevert
expFarms
, qFarms
,lFarms
,INIcalls
data(testAffyBatch) eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") INIs <- INIcalls(eset) # apply I/NI calls summary(INIs) plot(INIs) # draws a density plot of I/NI-calls I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names NI_probes <- getNI_ProbeSets(INIs) # vector containing only non-informative probe sets names