startEpiviz {epivizr} | R Documentation |
EpivizApp
object to manage connection.Start epiviz app and create EpivizApp
object to manage connection.
startEpiviz( host = NULL, http_port = NULL, path = NULL, use_devel = FALSE, chr = "chr11", start = 99800000, end = 103383180, debug = FALSE, workspace = NULL, scripts = NULL, gists = NULL, use_cookie = TRUE, register_function = .register_all_the_epiviz_things, open_browser = TRUE, server = NULL, browser_fun = utils::browseURL, ws_host = "localhost", ... )
host |
(character) use a host for the epiviz app other than the cbcb.umd.edu hosts. |
http_port |
(integer) port at host serving the epiviz app. |
path |
(character) path at host where epiviz app is located. |
use_devel |
(logical) use the devel epiviz application server (http://epiviz-dev.cbcb.umd.edu). |
chr |
(character) chromosome to browse to on app startup. |
start |
(integer) start location to browse to on app startup. |
end |
(integer) end location to browse to on app startup. |
debug |
(logical) start epiviz app in debug mode. |
workspace |
(character) a workspace id to load in the epiviz app on startup. |
scripts |
(character) URLs for JavaScript plugin scripts to be imported when epiviz is loaded (see http://epiviz.cbcb.umd.edu/help for details). |
gists |
(character) Ids for github gists (http://gist.github.com) containing JavaScript plugin scripts to be imported when epiviz is loaded (see http://epiviz.cbcb.umd.edu/help for details). |
use_cookie |
(logical) use cookies within the epiviz app. |
register_function |
(function) function used to register actions and charts on the epiviz app. |
open_browser |
(logical) browse to the epiviz URL before exiting function. |
server |
(EpivizServer) if not |
browser_fun |
(function) function used to browse to URL ( |
ws_host |
(character) host address to use for websocket connection ("localhost" by default) |
... |
additional parameters passed to |
An object of class EpivizApp
# see package vignete for example usage app <- startEpiviz(non_interactive=TRUE, open_browser=TRUE) app$stop_app()