DpeakMotif-class {dpeak} | R Documentation |
This class represents dPeak data.
Objects can be created by calls of the form new("DpeakMotif", ...)
.
motif
:Object of class "character"
,
representing a vector of motifs.
locMotif
:Object of class "list"
,
representing list of locations of motifs in candidate regions.
peakChr
:Object of class "character"
,
representing a vector of chromosome of each peak.
peakStart
:Object of class "numeric"
,
representing a vector of start position of each peak.
peakEnd
:Object of class "numeric"
,
representing a vector of end position of each peak.
signature(object = "DpeakMotif")
: fit the deconvolution model.
signature(object = "DpeakMotif")
: provide brief summary of the object.
Dongjun Chung
## Not run: library(BSgenome.Ecoli.NCBI.20080805) resultMotif <- dpeakMotif( peakfile="vignettes/examplePeak.txt", refGenome=Ecoli ) ## End(Not run)