plot,diggit-method {diggit} | R Documentation |
This function generate plots for the diggit conditional analysis
## S4 method for signature 'diggit' plot(x, mr = NULL, cluster = NULL, sub = NULL, ...)
x |
Diggit class object |
mr |
Optional vector of character strings indicating the MR names |
cluster |
Optional vector of cluster names |
sub |
Optional sub-title for the plot |
... |
Additional parameters to pass to the plot function |
Nothing, plots are generated in the default output device
data(gbm.expression, package="diggitdata") data(gbm.cnv, package="diggitdata") data(gbm.aracne, package="diggitdata") dobj <- diggitClass(expset=gbmExprs, cnv=gbmCNV, regulon=gbmTFregulon) dobj <- fCNV(dobj) dobj <- aqtl(dobj, mr=c("CEBPD", "STAT3"), fcnv.adjust="fdr", verbose=FALSE) dobj <- conditional(dobj, pheno="subtype", group1="MES", group2="PN", mr="STAT3", verbose=FALSE) plot(dobj, cluster="3")