fpkmMatrix {cummeRbund} | R Documentation |
Retrieve FPKM values as gene by condition (fpkmMatrix) or gene by replicate (repFpkmMatrix) matrix
## S4 method for signature 'CuffData' fpkmMatrix(object,fullnames=FALSE,sampleIdList) ## S4 method for signature 'CuffData' repFpkmMatrix(object,fullnames=FALSE,repIdList)
object |
An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature') |
fullnames |
A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels) |
sampleIdList |
A vector of sample names to subset the resulting matrix. |
repIdList |
A vector of sample names to subset the resulting matrix. |
None.
A feature x condition matrix of FPKM values.
None
Loyal A. Goff
None.
data(sampleData) fpkmMatrix(sampleGeneSet) repFpkmMatrix(sampleGeneSet)