ch2_subset {crossmeta} | R Documentation |
Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.
ch2_subset(eset, prev_anal)
eset |
ExpressionSet |
ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.