iqr_replicates {crossmeta}R Documentation

Removes features with replicated annotation.

Description

For rows with duplicated annot, highested IQR retained.

Usage

iqr_replicates(eset, annot = "SYMBOL", rm.dup = FALSE)

Arguments

annot

feature to use to remove replicates.

rm.dup

remove duplicates (same measure, multiple ids)? Used for Pathway analysis so that doesn't treat probes that map to multiple genes as distinct measures.

mod

Model matrix without surrogate variables. generated by diff_setup.

svobj

Result from sva function called during diff_setup.

Value

Expression set with unique features at probe or gene level.


[Package crossmeta version 1.16.1 Index]