ch2_subset {crossmeta}R Documentation

Subset for Paired Two-Channel ExpressionSet

Description

Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.

Usage

ch2_subset(eset, prev_anal)

Arguments

eset

ExpressionSet

Value

ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.


[Package crossmeta version 1.16.1 Index]