orderContigsGreedy {contiBAIT}R Documentation

Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within

Description

Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within

Usage

orderContigsGreedy(linkageGroupReadTable, randomAttempts = 75,
  nProcesses = 1, verbose = TRUE)

Arguments

linkageGroupReadTable

dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)

randomAttempts

number of times to repeat the greedy algortihm with a random restart

nProcesses

number of processes to attempt ordering in parallel

verbose

whether to print verbose messages

Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered


[Package contiBAIT version 1.18.0 Index]