binarize_expr {clustifyr} | R Documentation |
Binarize scRNAseq data
binarize_expr(mat, n = 1000, cut = 0)
mat |
single-cell expression matrix |
n |
number of top expressing genes to keep |
cut |
cut off to set to 0 |
matrix of 1s and 0s
pbmc_avg <- average_clusters( mat = pbmc_matrix_small, metadata = pbmc_meta, cluster_col = "classified" ) mat <- binarize_expr(pbmc_avg) mat[1:3, 1:3]