get_ucsc_reference {clustifyr} | R Documentation |
Build reference atlases from external UCSC cellbrowsers
get_ucsc_reference(cb_url, cluster_col, ...)
cb_url |
URL of cellbrowser dataset (e.g. http://cells.ucsc.edu/?ds=cortex-dev). Note that the URL must contain the ds=dataset-name suffix. |
cluster_col |
annotation field for summarizing gene expression (e.g. clustering, cell-type name, samples, etc.) |
... |
additional args passed to average_clusters |
get_ext_reference(cb_url = "http://cells.ucsc.edu/?ds=kidney-atlas%2FFetal_Immune", cluster_col = "celltype")