parse_loc_object {clustifyr} | R Documentation |
more flexible parsing of single cell objects
parse_loc_object( input, type = class(input), expr_loc = NULL, meta_loc = NULL, var_loc = NULL, cluster_col = NULL, lookuptable = NULL )
input |
input object |
type |
look up predefined slots/loc |
expr_loc |
expression matrix location |
meta_loc |
metadata location |
var_loc |
variable genes location |
cluster_col |
column of clustering from metadata |
lookuptable |
if not supplied, will look in built-in table for object parsing |
list of expression, metadata, vargenes, cluster_col info from object
obj <- parse_loc_object(s_small3) length(obj)