viewKEGG {clusterProfiler} | R Documentation |
viewKEGG function is for visualize KEGG pathways works with enrichResult object to visualize enriched KEGG pathway
viewKEGG( obj, pathwayID, foldChange, color.low = "green", color.high = "red", kegg.native = TRUE, out.suffix = "clusterProfiler" )
obj |
enrichResult object |
pathwayID |
pathway ID or index |
foldChange |
fold change values |
color.low |
color of low foldChange genes |
color.high |
color of high foldChange genes |
kegg.native |
logical |
out.suffix |
suffix of output file |
Luo et al. (2013) Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics (Oxford, England), 29:14 1830–1831, 2013. ISSN 1367-4803 http://bioinformatics.oxfordjournals.org/content/abstract/29/14/1830.abstract PMID: 23740750