simulateMultivariate {chromstaR} | R Documentation |
Simulate known states, read counts and read coordinates using a multivariate Hidden Markov Model.
simulateMultivariate( bins, transition, emissions, weights, correlationMatrices, combstates, IDs, fragLen = 50 )
bins |
A |
transition |
A matrix with transition probabilities. |
emissions |
A list() with data.frames with emission distributions (see |
weights |
A list() with weights for the three univariate states. |
correlationMatrices |
A list with correlation matrices. |
combstates |
A vector with combinatorial states. |
IDs |
A character vector with IDs. |
fragLen |
Length of the simulated read fragments. |
A list()
with entries $bins containing the simulated states and read count, $reads with simulated read coordinates.