getFragmentsPerPeak {chromVAR} | R Documentation |
getFragmentsPerPeak
getFragmentsPerPeak(object) ## S4 method for signature 'SummarizedExperiment' getFragmentsPerPeak(object) ## S4 method for signature 'MatrixOrmatrix' getFragmentsPerPeak(object)
object |
SummarizedExperiment, matrix, or Matrix object |
vector with sum across rows of counts assay within chromVARCounts
SummarizedExperiment
: method for SummarizedExperiment object
with counts assay
MatrixOrmatrix
: method for Matrix or matrix object
getFragmentsPerSample
,
getTotalFragments
# Load very small example counts (already filtered) data(mini_counts, package = "chromVAR") frags_per_peak <- getFragmentsPerPeak(mini_counts)