getFragmentsPerPeak {chromVAR}R Documentation

getFragmentsPerPeak

Description

getFragmentsPerPeak

Usage

getFragmentsPerPeak(object)

## S4 method for signature 'SummarizedExperiment'
getFragmentsPerPeak(object)

## S4 method for signature 'MatrixOrmatrix'
getFragmentsPerPeak(object)

Arguments

object

SummarizedExperiment, matrix, or Matrix object

Value

vector with sum across rows of counts assay within chromVARCounts

Methods (by class)

See Also

getFragmentsPerSample, getTotalFragments

Examples

# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")

frags_per_peak <- getFragmentsPerPeak(mini_counts)

[Package chromVAR version 1.12.0 Index]