import_ericscript {chimeraviz} | R Documentation |
A function that imports the results from a EricScript run into a list of Fusion objects.
import_ericscript(filename, genome_version, limit)
filename |
Filename for the EricScript results file. |
genome_version |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
ericscriptData <- system.file( "extdata", "ericscript_SRR1657556.results.total.tsv", package = "chimeraviz") fusions <- import_ericscript(ericscriptData, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.