build_tree {ccfindR}R Documentation

Build tree connecting clusters at different ranks

Description

Build tree connecting clusters at different ranks

Usage

build_tree(object, rmax)

Arguments

object

Object of class scNMFSet

rmax

Maximum rank at which tree branching stops

Value

List containing the tree structure

Examples

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree

[Package ccfindR version 1.10.0 Index]