modelPriorAS-class {casper} | R Documentation |
modelPriorAS
stores parameters for the prior distribution on
all possible alternative splicing configuration (i.e. prior on model
space). This information is used for de novo reconstruction of
splicing variants.
Objects are created by function modelPrior
.
Prior on the number of variants per gene. A list with components "nbpar"
containing
the parameters of the Negative Binomial distribution, "obs"
containing the observed counts and "pred"
the Negative
Binomial predicted counts.
Prior on the number of exons in an expressed
variant. A list with components "bbpar"
containing
Beta-Binomial parameters, "obs"
containing the observed
counts and "pred"
the Beta-Binomial predicted counts.
signature(object = "modelPriorAS")
: Displays
general information about the object.
Selects prior parameters for genes with the specified number of exons
Selects a single gene
David Rossell
procGenome
and createDenovoGenome
to
create modelPriorAS
objects.
showClass("modelPriorAS")