prepareENCODEgeneExpression {cTRAP} | R Documentation |
Load ENCODE gene expression data
prepareENCODEgeneExpression(samples)
samples |
List of loaded ENCODE samples |
Data frame containing gene read counts
Other functions related with using ENCODE expression data:
downloadENCODEknockdownMetadata()
,
loadENCODEsamples()
,
performDifferentialExpression()
if (interactive()) { # Load ENCODE metadata for a specific cell line and gene cellLine <- "HepG2" gene <- "EIF4G1" ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene) # Load samples based on filtered ENCODE metadata ENCODEsamples <- loadENCODEsamples(ENCODEmetadata)[[1]] prepareENCODEgeneExpression(ENCODEsamples) }