launchCMapDataLoader {cTRAP} | R Documentation |
Load CMap data via a visual interface
launchCMapDataLoader( metadata = "cmapMetadata.txt", zscores = "cmapZscores.gctx", geneInfo = "cmapGeneInfo.txt", compoundInfo = "cmapCompoundInfo.txt", cellLine = NULL, timepoint = NULL, dosage = NULL, perturbationType = NULL )
metadata |
Data frame (CMap metadata) or character (respective filepath) |
zscores |
Data frame (GCTX z-scores) or character (respective filepath to load data from file) |
geneInfo |
Data frame (CMap gene info) or character (respective filepath to load data from file) |
compoundInfo |
Data frame (CMap compound info) or character (respective filepath to load data from file) |
cellLine |
Character: cell line (if |
timepoint |
Character: timepoint (if |
dosage |
Character: dosage (if |
perturbationType |
Character: type of perturbation (if |
CMap data
Other visual interface functions:
launchDiffExprLoader()
,
launchMetadataViewer()
,
launchResultPlotter()