prepareDrugSets {cTRAP}R Documentation

Prepare drug sets from a table with compound descriptors

Description

Prepare drug sets from a table with compound descriptors

Usage

prepareDrugSets(table, id = 1, maxUniqueElems = 15)

Arguments

table

Data frame: drug descriptors

id

Integer or character: index or name of the column containing identifiers

maxUniqueElems

Numeric: maximum number of unique elements in a descriptor to consider when creating discrete drug sets

Value

Named list of characters: named drug sets with respective compound identifiers as list elements

See Also

Other functions for drug set enrichment analysis: analyseDrugSetEnrichment(), loadDrugDescriptors(), plotDrugSetEnrichment()

Examples

descriptors <- loadDrugDescriptors("NCI60")
prepareDrugSets(descriptors)

[Package cTRAP version 1.8.0 Index]