BeadLevelList-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList")
, but are usually created by readIllumina
.
Objects of this class contain the following slots
beadData : | an environment for storing the raw bead-level data. Each row correspond to a bead and columns the data. |
phenoData : | an 'AnnotatedDataFrame' containing experimental information. |
arrayInfo : | a list containing array information. |
annotation : | character storing annotation package information. |
arrayNames(object,arrays=NULL)
Returns the strip/array names from a
BeadLevelList
object for selected arrays
getArrayData(object,what="G",log=TRUE)
Retrieves
the what
intensities on the log
scale from the
BeadLevelList
Mark Dunning and Matt Ritchie