plotChipLayout {beadarray} | R Documentation |
Using the values obtained from a sentrix descriptor object generated by simpleXMLparse, a plot is generated showing samples and sections.
plotChipLayout(SD, subsC = NULL, sampC = NULL, sectC = NULL, desectC = "red", markC = "white", main = NULL, samplab = NULL, sectlab = NULL)
SD |
A sentrix descriptor object such as that generated by simpleXMLparse from an Illumina sdf file |
subsC |
The colour for the array substrate. Will be extracted from the sentrix descriptor object if null. |
sampC |
The colour for the samples. Will be extracted from the sentrix descriptor object if null. |
sectC |
The colour for the sections. Will be extracted from the sentrix descriptor object if null. |
desectC |
The colour with which to outline the decode sections |
markC |
The colour for plotting decoding and analytical markers |
main |
A title to give the figure (e.g. chip name) |
samplab |
labels for the samples. Will be extracted from the sentrix descriptor object if null. |
sectlab |
labels for the sections (if appropriate). Will be extracted from the sentrix descriptor object if null. |
returns a plot to the current device (recommend this is tall and thin)
Andy Lynch
## SD<-simpleXMLparse(mysdf) ## plotChipLayout(SD)