bamsignals {bamsignals}R Documentation

Efficient counting of reads in a bam file

Description

Functions and classes for extracting signals from a bam file. Differently than the other packages, this package is not supposed to import reads in R. All the read-processing is done in C/C++ and the only output are read counts.

Author(s)

Alessandro Mammana mammana@molgen.mpg.de

Johannes Helmuth helmuth@molgen.mpg.de

See Also

bamsignals-methods for the functions and CountSignals for the class.


[Package bamsignals version 1.22.0 Index]