AttractorModuleSet-class {attract} | R Documentation |
This is a class representation for storing the output of the findAttractors
function.
Objects are output by the function findAttractors
.
Objects can also be created by using new("AttractorModuleSet", ...)
.
eSet
:ExpressionSet which primarily stores the expression data and the phenotype/sample data sets.
cellTypeTag
:character string of the tag which stores the group membership information for the samples. Must be a column name of the data frame pData(eset).
incidenceMatrix
:incidence matrix used as input to GSEAlm.
rankedPathways
:Data frame of significantly enriched pathways, ranked first by significance and then by size.
No methods have yet been defined with class "AttractorModuleSet" in the signature.
This class is better describe in the vignette.
Jessica Mar jess@jimmy.harvard.edu
## Not run: new.attractmodule <- new("AttractorModuleSet", eSet=new("ExpressionSet"), cellTypeTag=character(1), incidenceMatrix=matrix(0), rankedPathways=data.frame()) ## End(Not run)