alevinQCShiny {alevinQC} | R Documentation |
Generate a shiny app summarizing the main aspects of an alevin quantification run. The app generation assumes that alevin has been run with the –dumpFeatures flag to generate the necessary output files.
alevinQCShiny(baseDir, sampleId, customCBList = list())
baseDir |
Path to the output directory from the alevin run (should be
the directory containing the |
sampleId |
Sample ID, will be used set the title for the app. |
customCBList |
Named list with custom set(s) of barcodes to provide summary statistics/plots for, in addition to the whitelists generated by alevin. |
A shiny app.
Charlotte Soneson
app <- alevinQCShiny(baseDir = system.file("extdata/alevin_example_v0.14", package = "alevinQC"), sampleId = "example") if (interactive()) { shiny::runApp(app) }