plotAlevinBarcodeCollapse {alevinQC}R Documentation

Summary plot of cell barcode collapsing

Description

Plot the original frequency of each cell barcode in the original whitelist against the frequency after collapsing similar cell barcodes.

Usage

plotAlevinBarcodeCollapse(cbTable)

Arguments

cbTable

data.frame (such as the cbTable returned by readAlevinQC) with barcode frequencies before and after collapsing.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinBarcodeCollapse(alevin$cbTable)


[Package alevinQC version 1.6.1 Index]