.abundanceAnalysis {abseqR} | R Documentation |
Conducts abundance analysis
.abundanceAnalysis(abundanceDirectories, abunOut, sampleNames, combinedNames, mashedNames, skipDgene = FALSE, .save = TRUE)
abundanceDirectories |
list type. List of sample directories |
abunOut |
string type. Output directory |
sampleNames |
vector type. 1-1 correspondence with abundanceDirectories |
combinedNames |
string type. Title "combined" sample names |
mashedNames |
string type. File "mashed" names - avoid special chars |
skipDgene |
logical type. Skip D gene plots? |
.save |
logical type. Save ggplot as Rdata |
None