.plotRarefaction {abseqR}R Documentation

Rarefaction plot

Description

Plots the number of unique clonotypes (on the y-axis) drawn from a sample size on the x axis. The number of unique clonotypes is averaged over 5 repeated rounds.

Usage

.plotRarefaction(files, sampleNames, regions = c("CDR3", "V"))

Arguments

files

list type. A list of files consisting of path to samples

sampleNames

vector type. A vector of strings, each being the name of samples in files

regions

vector type. A vector of strings, regions to be included. Defaults to c("CDR3", "V")

Value

ggplot2 object


[Package abseqR version 1.8.0 Index]