.findRepertoires {abseqR}R Documentation

Given a directory = <abseqPy_outputdir>/RESULT_DIR/, returns the directories (repositories) in 'directory'. That is, will not return any sample_vs_sample directories. This is done by asserting that a 'repository' must have an (analysis.params) file, and a summary.txt file.

Description

A sample_vs_sample directory will not have these files.

Usage

.findRepertoires(directory)

Arguments

directory

string. Path up until <abseqPy_outputdir>/RESULT_DIR/

Value

vector of strings that are samples in 'directory', note, this is NOT a full path, but just the sample/repertoire name itself


[Package abseqR version 1.8.0 Index]