1 Introduction

This document explains the functionalities available in the a4Reporting package.

This package contains utility functions to enhance reporting of data for the Automated Affymetrix Array Analysis suite of packages.

2 Create an annotation table

The annotationTable function enhances the reporting of table of genes or gene ontology term.

3 Top table of classification objects

A few utility functions to enhances the reporting of top tables for glmnet, lognet, elnet, pam and pam classification confusion are available.

4 Appendix

4.1 Session information

## R version 4.0.3 (2020-10-10)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows Server 2012 R2 x64 (build 9600)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=C                          
## [2] LC_CTYPE=English_United States.1252   
## [3] LC_MONETARY=English_United States.1252
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] a4Reporting_1.38.0
## 
## loaded via a namespace (and not attached):
##  [1] compiler_4.0.3  magrittr_1.5    htmltools_0.5.0 tools_4.0.3    
##  [5] yaml_2.2.1      stringi_1.5.3   rmarkdown_2.5   knitr_1.30     
##  [9] stringr_1.4.0   digest_0.6.27   xfun_0.18       xtable_1.8-4   
## [13] rlang_0.4.8     evaluate_0.14