dispTable {XBSeq} | R Documentation |
A method adopted from DESeq to examine the dispersion table information for a XBSeqDataSet object
dispTable(object, ...)
object |
a XBSeqDataSet |
... |
further argumnts are ignored |
Dispersion table information for a XBSeqDataSet object
Yuanhang Liu
H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.
estimateSCV
, dispEst
, XBSeqDataSet
conditions <- factor(c(rep('C1', 3), rep('C2', 3))) data(ExampleData) XB <- XBSeqDataSet(Observed, Background, conditions) XB <- estimateRealCount(XB) XB <- estimateSizeFactors(XB) XB <- estimateSCV(XB, fitType='local') dispTable(XB)