plotProfile {VplotR} | R Documentation |
A function to generate a Vplot along chromosome coordinates
plotProfile( fragments, window = loc, loci = NULL, annots = NULL, min = 50, max = 200, alpha = 0.5, size = 1, with_densities = TRUE, verbose = TRUE )
fragments |
GRanges |
window |
character, chromosome location |
loci |
GRanges, optional genomic locus. Fragments overlapping this locus will be in red. |
annots |
GRanges, optional gene annotations |
min |
integer, minimum fragment size |
max |
integer, maximum fragment size |
alpha |
float, transparency value |
size |
float, dot size |
with_densities |
Boolean, should the densities be plotted? |
verbose |
Boolean |
A ggplot
data(bam_test) data(ce11_proms) V <- plotProfile( bam_test, 'chrI:10000-12000', loci = ce11_proms, min = 80, max = 200 )