computeNucleosomeEnrichmentOverBackground {VplotR} | R Documentation |
A function to compute nucleosome enrichment of a Vmat
computeNucleosomeEnrichmentOverBackground( Vmat, background = NULL, plus1_nuc_only = FALSE, minus1_nuc = list(c(xmin = -150, xmax = -70), c(ymin = 165, ymax = 260)), minus1_nuc_neg = list(c(xmin = -150, xmax = -70), c(ymin = 60, ymax = 145)), plus1_nuc = list(c(xmin = 70, xmax = 150), c(ymin = 165, ymax = 260)), plus1_nuc_neg = list(c(xmin = 70, xmax = 150), c(ymin = 50, ymax = 145)), ... )
Vmat |
A Vmat computed by nucleosomeEnrichment function |
background |
a background Vmat |
plus1_nuc_only |
Boolean Should compute nucleosome enrichment only for +1 nucleosome? |
minus1_nuc |
list where the -1 nucleosome is located |
minus1_nuc_neg |
where the background of the -1 nucleosome is located |
plus1_nuc |
where the +1 nucleosome is located |
plus1_nuc_neg |
where the background of the +1 nucleosome is located |
... |
additional parameters |
list