extractCoverageForPositions {VariantTools}R Documentation

Get Coverage at Positions

Description

Gets values from an RleList corresponding to positions (width 1 ranges) in a GRanges (or VRanges). The result is a simple atomic vector.

Usage

extractCoverageForPositions(cov, pos)

Arguments

cov

An RleList like that returned by coverage.

pos

A GRanges consisting only of width-1 ranges.

Value

Atomic vector with one value from cov per position in pos.

Author(s)

Michael Lawrence


[Package VariantTools version 1.32.0 Index]