deseq2UMI4C {UMI4Cats} | R Documentation |
Transforms an DDS object to a UMI4C object after applying
nbinomWaldTestUMI4C
.
deseq2UMI4C( umi4c, dds, design = ~condition, normalized = TRUE, padj_method = "fdr", padj_threshold = 0.05 )
umi4c |
UMI4C object as generated by |
dds |
DDS object as generated by |
design |
A |
normalized |
Logical indicating if the function should return normalized or raw UMI counts. Default: TRUE. |
padj_method |
The method to use for adjusting p-values, see
|
padj_threshold |
Numeric indicating the adjusted p-value threshold to use to define significant differential contacts. Default: 0.05. |
UMI4C object with the DESeq2 Wald Test results.