UMI4C2dds {UMI4Cats} | R Documentation |
UMI4Cats object to DDS object.
Description
Transforms an UMI4C object to a DDS object
Usage
UMI4C2dds(umi4c, design = ~condition, query_regions = NULL, ...)
Arguments
umi4c |
UMI4C object as generated by makeUMI4C or the
UMI4C constructor.
|
design |
A formula or matrix . The formula expresses how
the counts for each fragment end depend on the variables in colData .
See DESeqDataSet .
|
query_regions |
GRanges object or data.frame containing
the coordinates of the genomic regions you want to use to perform the
analysis in specific genomic intervals. Default: NULL.
|
... |
Other arguments to be passed to DESeq
function.
|
Value
DDS object.
[Package
UMI4Cats version 1.0.1
Index]