plotDomainogram {UMI4Cats} | R Documentation |
Plot domainogram
plotDomainogram( umi4c, dgram_function = "quotient", grouping = NULL, colors = NULL, xlim = NULL )
umi4c |
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dgram_function |
Function used for calculating the fold-change in the domainogram plot, either "difference" or "quotient". Default: "quotient". |
grouping |
Grouping used for the different samples. If none available or
want to add new groupings, run |
colors |
Named vector of colors to use for plotting for each group. |
xlim |
Limits for the plot x axis (genomic coordinates). |
Produces the domainogram plot, summarizing the merged number of UMIs at the different scales analyzed (y axis).
data("ex_ciita_umi4c") ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition") plotDomainogram(ex_ciita_umi4c, grouping = "condition")