computeLimmaDiffExpr,ToxicoSet-method {ToxicoGx}R Documentation

Conduct differential expression analysis using the limma R pacakge

Description

WARNING: This function can take a very long time to compute!

Usage

## S4 method for signature 'ToxicoSet'
computeLimmaDiffExpr(object, buildTable = TRUE)

Arguments

object

A [‘ToxicoSet'] object with a molecular profile named ’rna'

buildTable

['logical'] Should the result of the eBayes function from limma be assembled into a data.table containing the result along with the gene, compound and durations names. Default it TRUE, otherwise this function with return the object produced by eBayes.

Value

A ['data.table'] containing the results the limma differential expression analysis comparing control vs each dose level for each compound within each duration.

Examples

if (interactive()) {
data(TGGATESsmall)
analysis <- computeLimmaDiffExpr(TGGATESsmall)
}


[Package ToxicoGx version 1.0.1 Index]