differentialExpression {TimeSeriesExperiment}R Documentation

Differential Expression for TimeSeriesExperiment

Description

Getter method for differentialExpression slot of a TimeSeriesExperiment. The slot is a list with differential expression results possibly containing elements named 'timepoint_de', and 'trajectory_de' computed with timepointDE and trajectoryDE functions.

Usage

differentialExpression(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
differentialExpression(object,
  name = NULL)

Arguments

object

a TimeSeriesExperiment object.

...

argiments to other functions.

name

one of elements of 'differentialExpression' slot: 'timepoint_de', 'trajectory_de'. If NULL, all elements are returned.

Value

a data.frame or a list of data.frames

Examples

data("endoderm_small")
endoderm_small <- trajectoryDE(endoderm_small)
head(differentialExpression(endoderm_small, "trajectory_de"))


[Package TimeSeriesExperiment version 1.8.0 Index]