as.marginal.probs {TRONCO} | R Documentation |
Extract the marginal probabilities from a TRONCO model. The return matrix is indexed with rownames which
represent genotype keys - these can be resolved with function keysToNames
. It is possible to
specify a subset of events to build the matrix, a subset of models if multiple reconstruction have
been performed. Also, either the observed or fit probabilities can be extracted.
as.marginal.probs( x, events = as.events(x), models = names(x$model), type = "observed" )
x |
A TRONCO model. |
events |
A subset of events as of |
models |
A subset of reconstructed models, all by default. |
type |
observed. |
The marginal probabilities in a TRONCO model.
data(test_model) as.marginal.probs(test_model) as.marginal.probs(test_model, events=as.events(test_model)[5:15,])