plot_CM {TFEA.ChIP} | R Documentation |
Function to generate an interactive html plot from a transcription factor enrichment table, output of the function 'getCMstats'.
plot_CM(CM.statMatrix, plot_title = NULL, specialTF = NULL, TF_colors = NULL)
CM.statMatrix |
Output of the function 'getCMstats'. A data frame storing: Accession ID of every ChIP-Seq tested, Transcription Factor,Odds Ratio, p-value and adjusted p-value. |
plot_title |
The title for the plot. |
specialTF |
(Optional) Named vector of TF symbols -as written in the enrichment table- to be highlighted in the plot. The name of each element of the vector specifies its color group, i.e.: naming elements HIF1A and HIF1B as 'HIF' to represent them with the same color. |
TF_colors |
(Optional) Nolors to highlight TFs chosen in specialTF. |
plotly scatter plot.
data('stat_mat',package = 'TFEA.ChIP') plot_CM(stat_mat)