rankTFs {TFEA.ChIP}R Documentation

Rank the TFs in the output from 'getCMstats'

Description

Rank the TFs in the output from 'getCMstats' using Wilcoxon rank-sum test or a GSEA-like approach.

Usage

rankTFs(resultsTable, rankMethod = "gsea", makePlot = FALSE,
  plotTitle = "TF ranking")

Arguments

resultsTable

Output from the function 'getCMstats'

rankMethod

"wilcoxon" or "gsea".

makePlot

(Optional) For rankMethod="gsea". If TRUE, generates a plot for TFs with a p-value < 0.05.

plotTitle

(Optional) Title for the plot.

Value

data frame containing:

Examples

data('stat_mat',package = 'TFEA.ChIP')
rankTFs( stat_mat )

[Package TFEA.ChIP version 1.10.0 Index]