TCGAsampleSelect {TCGAutils} | R Documentation |
The TCGA barcode contains several pieces of information which can
be parsed by the TCGAbarcode function. To select a specific type of
sample, enter the appropriate sampleCode argument from the lookup table.
See lookup table in data("sampleTypes")
. Barcode inputs can be a
character vector or a CharacterList object.
TCGAsampleSelect(barcodes, sampleCodes)
barcodes |
Either a TCGA barcode vector or CharacterList containing patient identifiers, sample, portion, plate, and center codes. |
sampleCodes |
Either a character or numeric vector of TCGA sample codes.
See the |
A logical vector or LogicalList of the same length as 'barcodes' indicating sample type matches
example("TCGAbarcode") TCGAsampleSelect(barcodes, c(11, 01))