dmc.non.parametric {TCGAbiolinks} | R Documentation |
Perform non-parametrix wilcoxon test
dmc.non.parametric( matrix, idx1 = NULL, idx2 = NULL, paired = FALSE, adj.method = "BH", alternative = "two.sided", cores = 1 )
matrix |
A matrix |
idx1 |
Index columns group1 |
idx2 |
Index columns group2 |
paired |
Do a paired wilcoxon test? Default: True |
adj.method |
P-value adjustment method. Default:"BH" Benjamini-Hochberg |
alternative |
wilcoxon test alternative |
cores |
Number of cores to be used |
Data frame with p-values and diff mean
nrows <- 200; ncols <- 20 counts <- matrix( runif(nrows * ncols, 1, 1e4), nrows, dimnames = list(paste0("cg",1:200),paste0("S",1:20)) ) TCGAbiolinks:::dmc.non.parametric(counts,1:10,11:20)