svmExternalData {SubCellBarCode}R Documentation

Peptide/exon/transcript centric or PTM enriched classification

Description

Peptide/exon/transcript centric or PTM enriched classification is applied to predict localization of them.

Usage

svmExternalData(df, modelA, modelB)

Arguments

df,

data frame fractionated additional data

modelA,

model for the replicate A classification

modelB,

model for the replicate B classification

Value

c.cls.df

Examples

{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])

set.seed(7)
c.prots <- sample(c.prots, 550)
cls <- svmClassification(c.prots, df, markerProteins)
modelA <- cls[[1]]$model
modelB <- cls[[2]]$model

exon.cls <- svmExternalData(SubCellBarCode::hcc827exon,
modelA = modelA, modelB = modelB)
}

[Package SubCellBarCode version 1.6.0 Index]