plotMultipleProtein {SubCellBarCode}R Documentation

Visualization of multiple protein localizations

Description

Distributions of subcellular localizations of multiple proteins both ar the compartment and neighborhood level are plotted.

Usage

plotMultipleProtein(sampleClassification, proteinList)

Arguments

sampleClassification

data.frame; merged classification, combination of compartment and neighborhood classifications per protein.

proteinList

vector; protein gene symbol names.

Value

multipleProt.df

Examples

{

proteasome26s <- c("PSMA7", "PSMC3", "PSMB1", "PSMA1", "PSMA3","PSMA4",
"PSMA5", "PSMB4", "PSMB6", "PSMB5","PSMC2", "PSMC4", "PSMB3", "PSMB2",
"PSMD4", "PSMA6", "PSMC1", "PSMC5", "PSMC6", "PSMB7", "PSMD13")

exp.cls.df <- SubCellBarCode::hcc827GEFClass

multipleProt.df <- plotMultipleProtein(exp.cls.df, proteasome26s )

}

[Package SubCellBarCode version 1.6.0 Index]