align_breakpoints {StructuralVariantAnnotation}R Documentation

Adjusting the nominal position of a pair of partnered breakpoint.

Description

Adjusting the nominal position of a pair of partnered breakpoint.

Usage

align_breakpoints(
  vcf,
  align = c("centre"),
  is_higher_breakend = names(vcf) < info(vcf)$PARID
)

Arguments

vcf

A VCF object.

align

The alignment type.

is_higher_breakend

Breakpoint ID ordering.

Value

A VCF object with adjusted nominal positions.


[Package StructuralVariantAnnotation version 1.6.0 Index]