simpleEventType {StructuralVariantAnnotation} | R Documentation |
Type of simplest explaination of event. Possible types are: | Type | Description | | BND | Single breakend | | CTX | Interchromosomal translocation | | INV | Inversion. Note that both ++ and – breakpoint will be classified as inversion regardless of whether the matching breakpoint actually exists | | DUP | Tandem duplication | | INS | Insertion | | DEL | Deletion |
simpleEventType(gr, insertionLengthThreshold = 0.5)
gr |
breakpoint GRanges object |
insertionLengthThreshold |
portion of inserted bases compared to total event size to be classified as an insertion. For example, a 5bp deletion with 5 inserted bases will be classified as an INS event. |
Type of simplest explaination of event