isInTissue,VisiumExperiment-method {SpatialExperiment}R Documentation

isInTissue

Description

returns a mask of TRUE/FALSE Barcodes spots, indicating which ones are in tissue and which ones are not.

Usage

## S4 method for signature 'VisiumExperiment'
isInTissue(x)

Arguments

x

a VisiumExperiment class object.

Value

a TRUE/FALSE mask.

Examples

ve <- readRDS(file=system.file(file.path("extdata", "10x_visium",
                         "ve.RDS"), package="SpatialExperiment"))
isInTissue(ve)
sum(isInTissue(ve))

[Package SpatialExperiment version 1.0.0 Index]