nkiResults {SigCheck} | R Documentation |
sigCheckAll
using the
breastCancerNKI
dataset.
This object represents the results lists returned by a call to
sigCheckAll
. It is used by the vignette accompanying the
SigCheck
package as an example result. It was derived by
running the code in the example below.
data(nkiResults)
## Not run: # This is how nkiResults is built library(breastCancerNKI) data(nki) nki = nki[,!is.na(nki$e.dmfs)] data(knownSignatures) check <- sigCheck(nki, classes="e.dmfs", survival="t.dmfs", signature=knownSignatures$cancer$VANTVEER, annotation="HUGO.gene.symbol", validationSamples=which(nki$series=="NKI2")) nkiResults <- sigCheckAll(check,iterations=1000) ## End(Not run) # Example usage of nkiResults data(nkiResults) sigCheckPlot(nkiResults)