get_clusters {STRINGdb}R Documentation

get_clusters

Description

Returns a list of clusters of interacting proteins. See the iGraph (http://igraph.sourceforge.net/) documentation for additional information on the algorithms.

Usage

## S4 method for signature 'STRINGdb'
get_clusters(string_ids, algorithm="fastgreedy")

Arguments

string_ids

a vector of STRING identifiers.

algorithm

algorithm to use for the clustering. You can choose between "fastgreedy", "walktrap", "spinglass" and "edge.betweenness").

Value

list of clusters of interacting proteins.

Author(s)

Andrea Franceschini


[Package STRINGdb version 2.2.2 Index]