annotateEvents {SPLINTER} | R Documentation |
Gives detailed description of splicing event in terms of splicing outcome post translation. Currently supports exon skipping and intron retention events.
annotateEvents( thedata, db, bsgenome, outputdir, full_output = FALSE, output_prefix = "results" )
thedata |
list. output of extractSpliceEvents. |
db |
TxDb object |
bsgenome |
BSGenome object |
outputdir |
character. relative output directory to current location. |
full_output |
logical. writes out detailed text report and generate figures. |
output_prefix |
character. text prefix for full_output files. |
list containing information on (1) data.frame with splicing regions (2) splice event type
Diana LOW