enrichment {SNPhood} | R Documentation |
Extract enrichment data from an object.
enrichment
extracts enrichment data from a SNPhood
object. The full count data or only a subset can be extracted
by settings the parameters type
, readGroup
and dataset
accordingly. Principally, either the count data
for the unbinned or binned SNP regions can be extracted.
enrichment(object, ...) ## S4 method for signature 'SNPhood' enrichment(object, readGroup = NULL, dataset = NULL, ...)
object |
An object containing enrichment information. |
... |
Additional arguments, for use in specific methods. |
readGroup |
Character(1). Default NULL. Read group that should be plotted, specified by its name as obtained by the function |
dataset |
Numeric(1) or Character(1). Single dataset that should be used for plotting, either specified as integer (such as 1, value must be
between 1 and the total number of datasets as defined in the object) or its annotation (name must appear in the dataset names as obtained via the function |
Enrichment of the object or the objects components.
Named list with the requested enrichment matrices from the SNPhood
object, organized by read group and dataset
data(SNPhood.o, package="SNPhood") str(enrichment(SNPhood.o), list.len=5)