plotDensityPval {SMITE}R Documentation

Plot the density of the combined scores stored in a PvalueObject

Description

This function in called by the normalizePval function, but can also be called by the user to visualize the relative densities of combined p-values (scores).

Usage

plotDensityPval(pvalue_annotation, ref = "expression_pvalue", ...)

Arguments

pvalue_annotation

An S4 object of class PvalueAnnotation.

ref

A character specifying the name of the reference category. DEFAULT is "expression_pvalue"

...

Additional plotting arguments

Value

Plots a multidensity plot.

Author(s)

N. Ari Wijetunga

Examples

## Load test annotation with only score data ##
data(test_annotation_score_data)

plotDensityPval(pvalue_annotation=test_annotation)


[Package SMITE version 1.18.0 Index]