generateEvalPlot {SCnorm} | R Documentation |
Genes are divided into NumExpressionGroups = 10 equally sized groups based on their non-zero median expression. Slope densities are plot for each group.
generateEvalPlot( MedExpr, SeqDepth, Slopes, Name, NumExpressionGroups = 10, BeforeNorm = TRUE )
MedExpr |
non-zero median expression for all genes. |
SeqDepth |
sequencing depth for each cell/sample. |
Slopes |
per gene estimates of the count-depth relationship. |
Name |
name for plot title. |
NumExpressionGroups |
the number of groups to split the data into, genes are split into equally sized groups based on their non-zero median expression. |
BeforeNorm |
whether dat have already been normalized. |
a plot of the un-normalized slope densities.
Rhonda Bacher