rqcReadFrequencyCalc {Rqc}R Documentation

Read frequency plot

Description

This function creates a bar graph of read frequency (in percentage).

Usage

rqcReadFrequencyCalc(rqcResultSet)

rqcReadFrequencyPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples


checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcReadFrequencyPlot(rqcResultSet)


[Package Rqc version 1.24.0 Index]