rqcReport {Rqc} | R Documentation |
Generates an HTML report file.
rqcReport(rqcResultSet, outdir = tempdir(), file = "rqc_report", keepMD = FALSE, templateFile = system.file("templates", package = "Rqc", "rqc_report.Rmd"))
rqcResultSet |
list of |
outdir |
output directory path. It is created a temporary directory by default. |
file |
output file name. |
keepMD |
If true Rqc does not delete markdown file. |
templateFile |
Path of Rmarkdown file as Rqc web report template. |
Also creates a directory called "figure" in outdir
path.
Report file path.
Welliton Souza
options(device.ask.default = FALSE) checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), { folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147") files <- list.files(full.names=TRUE, path=folder) rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1) }, keep="rqcResultSet") reportFile <- rqcReport(rqcResultSet) browseURL(reportFile)