rqcFileHeatmap {Rqc} | R Documentation |
This function plots a heatmap of distance matrix of top over-represented reads. This function does not work with list of RqcResultSet objects, only with one RqcResultSet object.
rqcFileHeatmap(rqcResultSet, dist.method = "euclidean", hclust.method = "ward.D")
rqcResultSet |
|
dist.method |
the distance measure to be used by |
hclust.method |
the agglomeration method to be used by |
Plot object from ggplot
function.
Welliton Souza
checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), { folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147") files <- list.files(full.names=TRUE, path=folder) rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1) }, keep="rqcResultSet") rqcFileHeatmap(rqcResultSet[[1]])