rqcGroupCycleAverageQualityCalc {Rqc} | R Documentation |
This function plots cycle-specific quality by groups
rqcGroupCycleAverageQualityCalc(rqcResultSet) rqcGroupCycleAverageQualityPlot(rqcResultSet)
rqcResultSet |
list of |
ggplot2 object
rqcGroupCycleAverageQualityCalc
: calculates necessary statistics
Welliton Souza
rqcCycleAverageQualityPlot
plots cycle-specific quality by files
checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), { folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147") files <- list.files(full.names=TRUE, path=folder) rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1) }, keep="rqcResultSet") rqcGroupCycleAverageQualityPlot(rqcResultSet)