rnb.plot.region.site.density {RnBeads} | R Documentation |
Plots the density of sites accross the specified region type
rnb.plot.region.site.density(rnb.set, region.type, extend.by = 0.33)
rnb.set |
RnBSet object |
region.type |
Region type for which the plot should be generated |
extend.by |
A number between 0 and 1 specifying the percentage by which a region is extended in order to capture methylation information before region start and after region end |
a ggplot2 object for plotting the plot shows the density of sites accross the specified region type for all regions of that type from 0 (region start) to 1 (region end). Sites in the flanking areas are also shown (coordinates <0 and >1).
Fabian Mueller
library(RnBeads.hg19) data(small.example.object) logger.start(fname=NA) rnb.plot.region.site.density(rnb.set.example,"genes")