get.cpg.stats {RnBeads} | R Documentation |
Computes CpG-related statistics for the specified regions.
get.cpg.stats(chrom.sequence, starts, ends)
chrom.sequence |
Chromosome sequence, usually obtained from the assembly's genome definition. This must be an
object of type |
starts |
|
ends |
|
Table of statistics for the regions in the form of a matrix
with the following columns:
"CpG"
and "GC"
. The columns contain the number of CpG dinucleoties and the number of C and G
bases in each region.
Yassen Assenov