qcSummary {Rfastp}R Documentation

Summary of Fastq Quality Control

Description

generate a data frame of the Fastq QC summary.

Usage

qcSummary(json)

Arguments

json

the output json of function rfastq. [json]

Value

a data frame.

Author(s)

Wei Wang

Examples


outputPrefix <- tempfile(tmpdir = tempdir())
se_read1 <- system.file("extdata","Fox3_Std_small.fq.gz",package="Rfastp")
se_json_report <- rfastp(read1 = se_read1, outputFastq = outputPrefix,
   thread = 4)
df_summary <- qcSummary(se_json_report)


[Package Rfastp version 1.0.0 Index]