RchyOptimyx-package {RchyOptimyx} | R Documentation |
RchyOptimyx is a computational tool which determines the minimal sets of markers that can identify a target population within a given purity standard. This can enable panel redesign using smaller subsets of markers, with consequent savings on reagents, potential for adaptation to older instruments, or the addition of other markers of interest to the panel design.
Package: | RchyOptimyx |
Type: | Package |
Version: | 0.99.1 |
Date: | 2011-10-12 |
License: | Artistic-2.0 |
LazyLoad: | yes |
See the RchyOptimyx
function.
Nima Aghaeepour <naghaeep@gmail.com> and Adrin Jalali <ajalali@bccrc.ca>
D. Eppstein, Finding the k shortest paths, SIAM J. Comput., 1998 - Citeseer.
RchyOptimyx
data(HIVData) res<-RchyOptimyx(PhenoCodes, -log10(LogRankPvals), '2000102001', 5,FALSE) plot(res,phenotypeCodes=PhenoCodes,phenotypeScores=-log10(LogRankPvals),marker.names=marker.names)