Rbowtie-package {Rbowtie} | R Documentation |
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool.
The package is used by the QuasR bioconductor package. We recommend to use QuasR instead of using Rbowtie
directly. QuasR provides a simpler interface than Rbowtie
and covers the whole analysis workflow of typical ultra-high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification.
See packageDescription('Rbowtie') for package details.
Florian Hahne, Anita Lerch, Michael B Stadler
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