avs.plot2 {RTN} | R Documentation |
This function takes an AVS object and plots results from the VSE and EVSE methods.
avs.plot2(object, what="evse", fname=what, width=14, height=2.5, rmargin=1, bxseq=seq(-4,8,2), decreasing=TRUE, ylab="Annotation", xlab="Clusters of risk-associated and linked SNPs", tfs=NULL)
object |
an object of class 'AVS' |
what |
a single character value specifying which analysis should be used. Options: "vse" and "evse". |
fname |
a character value specifying the name of output file. |
height |
a numeric value specifying the height of the graphics region in inches. |
width |
a numeric value specifying the width of the graphics region in inches. |
rmargin |
a numeric value specifying the right margin size in inches. |
bxseq |
a numeric vector specifying which x-axis tickpoints are to be drawn. |
decreasing |
a logical value, used to sort by EVSE scores. |
ylab |
a character value specifying the y-axis label. |
xlab |
a character value specifying the x-axis label (on the top of the grid image). |
tfs |
an optional vector with annotation identifiers (e.g. transcription factor). |
A plot showing results from the VSE and EVSE methods.
Mauro Castro
# see 'avs.vse' and 'avs.evse' methods.