getCNGECorrelation {RTCGAToolbox}R Documentation

Perform correlation analysis between gene expression and copy number data

Description

getCNGECorrelation returns a list that stores the results correlation between gene expression and copy number data.

Usage

getCNGECorrelation(
  dataObject,
  adj.method = "BH",
  adj.pval = 0.05,
  raw.pval = 0.05
)

Arguments

dataObject

This must be FirehoseData object.

adj.method

Raw p value adjustment methods (Default "BH")

adj.pval

Adjusted p value cut off for results table (Default 0.05)

raw.pval

raw p value cut off for results table (Default 0.05)

Value

Returns a list that stores results for each dataset

Examples

data(accmini)

[Package RTCGAToolbox version 2.20.0 Index]