rpaplot {RPA} | R Documentation |
rpaplot Plot RPA results and probe-level data for a specified probeset.
rpaplot(dat, mu = NULL, tau2 = NULL, affinity = NULL, highlight.probes = NULL, pcol = "darkgrey", mucol = "black", ecol = "red", cex.lab = 1.5, cex.axis = 1, cex.main = 1, cex.names = 1, external.signal = NULL, main = "", plots = "all", ...)
dat |
Background-corrected and normalized data: probes x samples. |
mu |
probeset signal |
tau2 |
probe variances |
affinity |
probe affinities |
highlight.probes |
Optionally highlight some of the probes (with dashed line) |
pcol |
Color for probe signal visualization. |
mucol |
Color for summary estimate. |
ecol |
Color for external signal. |
cex.lab |
Label size adjustment parameters. |
cex.axis |
Axis size adjustment parameters. |
cex.main |
Title size adjustment parameters. |
cex.names |
Names size adjustment parameters. |
external.signal |
Plot external signal on the probeset. For instance, an alternative summary estimate from another preprocessing methods |
main |
Title text. |
plots |
"all": plot data and summary, noise and affinity; "data": plot data and summary |
... |
Other parameters to pass for plot function. |
Plots the preprocessed probe-level observations, estimated probeset-level signal, and probe-specific variances. It is also possible to highlight individual probes and external summary measures.
Used for its side-effects. Returns probes x samples matrix of probe-level data plotted on the image.
Leo Lahti leo.lahti@iki.fi
See citation("RPA")
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